Dr Arthur Hsu

  • Room: Level: 10 Room: 10.2.077
  • Building: VCCC-305 Grattan St
  • Campus: Parkville

Research interests

  • Bioinformatics (Cancer Genomics)

Recent publications

  1. Grillet F, Bayet E, Villeronce O, Zappia L, Lagerqvist EL, Lunke S, Charafe-Jauffret E, Pham T, Molck C, Rolland N, Bourgaux JF, Prudhomme M, Philippe C, Bravo S, Boyer JC, Canterel-Thouennon L, Taylor G, Hsu A, Pascussi JM, Hollande F, Pannequin J. Circulating tumour cells from patients with colorectal cancer have cancer stem cell hallmarks in ex vivo culture. Gut. British Medical Journal Publishing Group. 2016.
  2. Hsu A, Kondrashova O, Lunke S, Love CJ, Meldrum C, Marquis-Nicholson RL, Corboy G, Kym P, Wakefield M, Waring P, Taylor G. AmpliVar: Mutation Detection in High-Throughput Sequence from Amplicon-Based Libraries. HUMAN MUTATION. Wiley-Liss. 2015, Vol. 36, Issue 4.
  3. Kondrashova O, Love CJ, Lunke S, Hsu A, Waring P, Taylor G. High-Throughput Amplicon-Based Copy Number Detection of 11 Genes in Formalin-Fixed Paraffin-Embedded Ovarian Tumour Samples by MLPA-Seq. PLOS ONE. Public Library of Science. 2015, Vol. 10, Issue 11.
  4. Bennetts B, Caramins M, Hsu A, Lau C, Mead S, Meldrum C, Smith T, Suthers G, Taylor G, Cotton R, Tyrrell V. Quality standards for DNA sequence variation databases to improve clinical management under development in Australia. Applied and Translational Genomics. 2014.
  5. Schroeder J, Hsu A, Boyle S, MacIntyre G, Cmero M, Tothill R, Johnstone R, Shackleton M, Papenfuss A. Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads. Bioinformatics. Oxford University Press. 2014, Vol. 30, Issue 8.
  6. Wijetunge A, Li Z, Saeed I, Bowne J, Hsu A, Roessner U, Bacic A, Halgamuge S. Exploratory analysis of high-throughput metabolomic data. Metabolomics. Springer. 2013, Vol. 9, Issue 6.
  7. Tseng C, Chan CK, Hsu A, Halgamuge S, Tang S. Binning Metagenomic Sequences Using Seeded GSOM. Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. Wiley-Blackwell Publishing. 2011. Editors: De Bruijn F.
  8. Renfree M, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo E, Shaw G, Wong ESW, Lefevre CM, Nicholas KR, Kuroki Y, Wakefield M, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg S, Chew KY, Menzies B, Stringer JM, Suzuki S, Hore TA, Delbridge ML, Patel HR, Mohammadi A, Schneider NY, Hu Y, O'Hara W, Al Nadaf S, Wu C, Feng Z-P, Cocks BG, Wang J, Flicek P, Searle SMJ, Fairley S, Beal K, Herrero J, Carone DM, Suzuki Y, Sugano S, Toyoda A, Sakaki Y, Kondo S, Nishida Y, Tatsumoto S, Mandiou I, Hsu A, McColl KA, Lansdell B, Weinstock G, Kuczek E, McGrath A, Wilson P, Men A, Hazar-Rethinam M, Hall A, Davis J, Wood D, Williams S, Sundaravadanam Y, Muzny DM, Jhangiani SN, Lewis LR, Morgan MB, Okwuonu GO, Ruiz SJ, Santibanez J, Nazareth L, Cree A, Fowler G, Kovar CL, Dinh HH, Joshi V, Jing C, Lara F, Thornton R, Chen L, Deng J, Liu Y, Shen JY, Song X-Z, Edson J, Troon C, Thomas D, Stephens A, Yapa L, Levchenko T, Gibbs RA, Cooper DW, Speed T, Fujiyama A, Graves JAM, O'Neill RJ, Pask A, Forrest SM, Worley KC. Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development (vol 12, pg R81, 2011). GENOME BIOLOGY. Biomed Central. 2011, Vol. 12, Issue 12.
  9. Papenfuss A, Hsu A, Wakefield M. Marsupial sequencing projects and bioinformatics challenges. Marsupial Genetics and Genomics. 2010.
  10. Whittington CM, Papenfuss A, Locke DP, Mardis ER, Wilson RK, Abubucker S, Mitreva M, Wong ESW, Hsu A, Kuchel PW, Belov K, Warren WC. Novel venom gene discovery in the platypus. GENOME BIOLOGY. Biomed Central. 2010, Vol. 11, Issue 9.
  11. Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Graves JAM, Woods GM, Hannon GJ, Papenfuss A. The Tasmanian Devil Transcriptome Reveals Schwann Cell Origins of a Clonally Transmissible Cancer. SCIENCE. American Society for the Advancement of Science. 2010, Vol. 327, Issue 5961.
  12. Hsu A, Saeed I, Halgamuge S. Dynamic Self-Organising Maps: Theory, Methods and Applications%. Foundations on Computational Intelligence. Springer Verlag. 2009.
  13. Senaratne RS, Halgamuge S, Hsu A. Face recognition by extending elastic bunch graph matching with particle swarm optimization. Journal of Multimedia. Academy Publisher. 2009, Vol. 4, Issue 4.
  14. Chan CKK, Hsu A, Halgamuge S, Tang S. Binning sequences using very sparse labels within a metagenome. BMC Bioinformatics. Biomed Central. 2008, Vol. 9.
  15. Hsu A, Halgamuge S. Class structure visualization with semi-supervised growing self-organizing maps. Neurocomputing. Elsevier BV. 2008, Vol. 71, Issue 16-18.

View a full list of publications on the University of Melbourne’s ‘Find An Expert’ profile